cycombinepy.plotting.plot_density

cycombinepy.plotting.plot_density(adata, markers=None, layer='cycombine_corrected', batch_key='batch', filename=None)

Per-marker density plot colored by batch.

If layer is set and present, the corrected distribution is overlaid alongside the uncorrected adata.X for easy before/after comparison. Mirrors plot_density in R/utils_plotting.R.

Parameters:

• adata (AnnData)

• markers (Iterable[str] | None)

• layer (str | None)

• batch_key (str)

• filename (str | PathLike | None)