cycombinepy.plotting.plot_dimred

cycombinepy.plotting.plot_dimred(adata, kind='umap', color='batch', layer=None, seed=0)

Thin wrapper around scanpy.pl.umap / scanpy.pl.pca.

If layer is provided, the PCA is computed on that layer so the plot reflects the corrected values.

Parameters:

• adata (AnnData)

• kind (str)

• color (str | list[str])

• layer (str | None)

• seed (int)