Contents Menu Expand Light mode Dark mode Auto light/dark, in light mode Auto light/dark, in dark mode Skip to content
cyCombinePy 0.1
cyCombinePy 0.1

Getting started

  • Installation
  • Usage guide

Tutorials

  • Main cyCombine workflow (Python port)
  • Detecting batch effects (Python port)

Reference

  • API reference
    • cycombinepy.transform_asinh
    • cycombinepy.normalize
    • cycombinepy.create_som
    • cycombinepy.batch_correct
    • cycombinepy.correct_data
    • cycombinepy.compute_emd
    • cycombinepy.evaluate_emd
    • cycombinepy.compute_mad
    • cycombinepy.evaluate_mad
    • cycombinepy.detect_batch_effect
    • cycombinepy.detect_batch_effect_express
    • cycombinepy.get_markers
    • cycombinepy.check_confound
    • cycombinepy.io.read_fcs_dir
    • cycombinepy.plotting.plot_density
    • cycombinepy.plotting.plot_dimred
    • cycombinepy.plotting.plot_emd_heatmap
    • cycombinepy.evaluate.scib_metrics
Back to top
Copyright © 2026, cycombinepy contributors
Made with Sphinx and @pradyunsg's Furo